Journal: Antimicrobial Agents and Chemotherapy

Article Title: In Vivo Characterization of the Peptide Deformylase Inhibitor LBM415 in Murine Infection Models

doi: 10.1128/aac.00026-09

Figure Lengend Snippet: FIG. 2. Efficacy of LBM415 and moxifloxacin against lung infection in mice by S. pneumoniae ATCC 6303. Oral treatments were given twice daily for 3 days, starting 16 h postinfection; bacterial counts per lung (log10 CFU/lung) were plotted for each dose tested. *, P 0.05 versus the control.

Article Snippet: Three Staphylococcus aureus strains, ATCC 49951, ATCC 13709, and NB01021, and three Streptococcus pneumoniae strains, ATCC 6301, ATCC 6303 and ATCC 700677, were investigated.

Techniques: Infection, Control

Journal: Nucleic Acids Research

Article Title: Prediction and large-scale analysis of primary operons in plastids reveals unique genetic features in the evolution of chloroplasts

doi: 10.1093/nar/gkz151

Figure Lengend Snippet: Model performance evaluation. ( A ) Accuracy scores of the random-forest classifier on real labels and random labels (see legend). \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}${N_{{\rm CDS}}}$\end{document} = 121, \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}${N_{{\rm mixed}}}$\end{document} = 92. ( B ) Prediction accuracies on the red alga Cyanidioschyzon merolae when discarded from the initial dataset, and on the cyanobacteria Synechocystis sp. PCC6803 labels derived from . The bars represent coding-sequence gene pairs (‘CDS group’), a mixture of tRNA, rRNA or coding sequence gene pairs (‘mixed group’) and the weighted mean of the two groups (‘overall’). Synechocystis sp. PCC6803 encompasses only CDS gene pairs. The bars show mean ± STD. ( C ) Type I (false-positive mistake) error test. ( D ) type II (false-negative mistake) error test. An overall of 19 errors were introduced into the labels and for each error rate the prediction pipeline was repeated. The same analysis was carried out on random labels. All accuracy scores were calculated based on the average accuracies of ten bootstrap trained samples.

Article Snippet: All other operon data of cyanobacteria (i.e. Nostoc azollae, Acaryochloris marina, Cyanothece sp. ATCC, Trichodesmium erythraeum, Gloeobacter violaceus PCC 7421 and Synechococcus elongatus PCC 6301) were retrieved from DOOR2 ( ).

Techniques: Derivative Assay, Sequencing

Journal:

Article Title: Interactions between Penicillin-Binding Proteins (PBPs) and Two Novel Classes of PBP Inhibitors, Arylalkylidene Rhodanines and Arylalkylidene Iminothiazolidin-4-ones

doi: 10.1128/AAC.48.3.961-969.2004

Figure Lengend Snippet: MICs of test compounds

Article Snippet: Furthermore, no activity against S. pneumoniae ATCC 6301 or E. coli ATCC 25922 was observed.

Techniques: